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6 publications found

Eelbrain, a Python toolkit for time-continuous analysis with temporal response functions

Christian Brodbeck, Proloy Das, Marlies Gillis, Pranjeevan Kulasingham, Shohini Bhattasali, Phoebe Gaston, Philip Resnik, Jonathan Z Simon

Journal Elife , vol. 12 , pp. e85012 · 2023 · Cited by 143

Statistical Signal Processing and EstimationBiosignal Processing

Abstract

Even though human experience unfolds continuously in time, it is not strictly linear; instead, it entails cascading processes building hierarchical cognitive structures. For instance, during speech perception, humans transform a continuously varying acoustic signal into phonemes, words, and meaning, and these levels all have distinct but interdependent temporal structures. Time-lagged regression using temporal response functions (TRFs ) has recently emerged as a promising tool for disentangling electrophysiological brain responses related to such complex models of perception. Here, we introduce the Eelbrain Python toolkit, which makes this kind of analysis easy and accessible. We demonstrate its use, using continuous speech as a sample paradigm, with a freely available EEG dataset of audiobook listening. A companion GitHub repository provides the complete source code for the analysis, from raw data to group-level statistics. More generally, we advocate a hypothesis-driven approach in which the experimenter specifies a hierarchy of time-continuous representations that are hypothesized to have contributed to brain responses, and uses those as predictor variables for the electrophysiological signal. This is analogous to a multiple regression problem, but with the addition of a time dimension. TRF analysis decomposes the brain signal into distinct responses associated with the different predictor variables by estimating a multivariate TRF (mTRF), quantifying the influence of each predictor on brain responses as a function of time(-lags). This allows asking two questions about the predictor variables: (1) Is there a significant neural …

Neural tracking measures of speech intelligibility: Manipulating intelligibility while keeping acoustics unchanged

IM Dushyanthi Karunathilake, Pranjeevan Kulasingham, Jonathan Z Simon

Conference Proceedings of the National Academy of Sciences , vol. 120(49) , pp. e2309166120 · 2023 · Cited by 36

Speech, Audio and Acoustic ProcessingBiosignal Processing

Abstract

Neural speech tracking has advanced our understanding of how our brains rapidly map an acoustic speech signal onto linguistic representations and ultimately meaning. It remains unclear, however, how speech intelligibility is related to the corresponding neural responses. Many studies addressing this question vary the level of intelligibility by manipulating the acoustic waveform, but this makes it difficult to cleanly disentangle the effects of intelligibility from underlying acoustical confounds. Here, using magnetoencephalography recordings, we study neural measures of speech intelligibility by manipulating intelligibility while keeping the acoustics strictly unchanged. Acoustically identical degraded speech stimuli (three-band noise-vocoded, ~20 s duration) are presented twice, but the second presentation is preceded by the original (nondegraded) version of the speech. This intermediate priming, which generates a …

Altered directional functional connectivity underlies post-stroke cognitive recovery

Behrad Soleimani, Isabella Dallasta, Proloy Das, Pranjeevan Kulasingham, Sophia Girgenti, Jonathan Z Simon, Behtash Babadi, Elisabeth B Marsh

Journal Brain Communications , vol. 5(3) , pp. fcad149 · 2023 · Cited by 25

Biosignal ProcessingPhysiological Monitoring and Digital Health

Abstract

Cortical ischaemic strokes result in cognitive deficits depending on the area of the affected brain. However, we have demonstrated that difficulties with attention and processing speed can occur even with small subcortical infarcts. Symptoms appear independent of lesion location, suggesting they arise from generalized disruption of cognitive networks. Longitudinal studies evaluating directional measures of functional connectivity in this population are lacking. We evaluated six patients with minor stroke exhibiting cognitive impairment 6–8 weeks post-infarct and four age-similar controls. Resting-state magnetoencephalography data were collected. Clinical and imaging evaluations of both groups were repeated 6- and 12 months later. Network Localized Granger Causality was used to determine differences in directional connectivity between groups and across visits, which were correlated with clinical …

Cortical responses time-locked to continuous speech in the high-gamma band depend on selective attention

Vrishab Commuri, Pranjeevan Kulasingham, Jonathan Z Simon

Journal Frontiers in Neuroscience , vol. 17 , pp. 1264453 · 2023 · Cited by 18

Speech, Audio and Acoustic ProcessingBiosignal Processing

Abstract

Auditory cortical responses to speech obtained by magnetoencephalography (MEG) show robust speech tracking to the speaker's fundamental frequency in the high-gamma band (70–200 Hz), but little is currently known about whether such responses depend on the focus of selective attention. In this study 22 human subjects listened to concurrent, fixed-rate, speech from male and female speakers, and were asked to selectively attend to one speaker at a time, while their neural responses were recorded with MEG. The male speaker's pitch range coincided with the lower range of the high-gamma band, whereas the female speaker's higher pitch range had much less overlap, and only at the upper end of the high-gamma band. Neural responses were analyzed using the temporal response function (TRF) framework. As expected, the responses demonstrate robust speech tracking of the fundamental frequency in the high-gamma band, but only to the male's speech, with a peak latency of ~40 ms. Critically, the response magnitude depends on selective attention: the response to the male speech is significantly greater when male speech is attended than when it is not attended, under acoustically identical conditions. This is a clear demonstration that even very early cortical auditory responses are influenced by top-down, cognitive, neural processing mechanisms.

A knowledge distillation framework for enhancing ear-EEG based sleep staging with scalp-EEG data

Mithunjha Anandakumar, Jathurshan Pradeepkumar, Simon L Kappel, Chamira U. S. Edussooriya, Anjula C. De Silva

Conference SMC 2023 IEEE International Conference on Systems, Man, and Cybernetics (SMC) , pp. 514-519 · 2023 · Cited by 9

Machine Learning and Pattern RecognitionBiosignal ProcessingPhysiological Monitoring and Digital Health

Abstract

Sleep plays a crucial role in the well-being of human lives. Traditional sleep studies using Polysomnography are associated with discomfort and often lower sleep quality caused by the acquisition setup. Previous works have focused on developing less obtrusive methods to conduct high-quality sleep studies, and ear- EEG is among popular alternatives. However, the performance of sleep staging based on ear-EEG is still inferior to scalp- EEG based sleep staging. In order to address the performance gap between scalp-EEG and ear- EEG based sleep staging, we propose a cross-modal knowledge distillation strategy 1 † https://github.com/Mithunjha/EarEEG_KnowledgeDistillation, which is a domain adaptation approach. We employ model architectures from the transformer and convolutional neural network families to demonstrate the model-agnostic nature of the method. Our experiments and analysis validate the …

Direct Estimation of Linear Filters for EEG Source-Localization in a Competing-Talker Scenario

Johanna Wilroth, Pranjeevan Kulasingham, Martin A Skoglund, Emina P Alickovic

Journal IFAC-PapersOnLine , vol. 56(2) , pp. 6510-6517 · 2023 · Cited by 3

Statistical Signal Processing and EstimationSpeech, Audio and Acoustic ProcessingBiosignal Processing

Abstract

Hearing-impaired listeners have a reduced ability to selectively attend to sounds of interest amid distracting sounds in everyday environments. This ability is not fully regained with modern hearing technology. A better understanding of the brain mechanisms underlying selective attention during speech processing may lead to brain-controlled hearing aids with improved detection and amplification of the attended speech. Prior work has shown that brain responses to speech, measured with magnetoencephalography (MEG) or electroencephalography (EEG), are modulated by selective attention. These responses can be predicted from the speech signal through linear filters called Temporal Response Functions (TRFs). Unfortunately, these sensor-level predictions are often noisy and do not provide much insight into specific brain source locations. Therefore, a novel method called Neuro-Current Response Functions …